#include <ffpopsim_highd.h>

Collaboration diagram for rooted_tree:

Public Member Functions
	rooted_tree ()

virtual	~rooted_tree ()

void	reset ()

void	add_generation (vector< node_t > &new_generation, double mean_fitness)

int	add_terminal_node (node_t &newNode)

tree_key_t	erase_edge_node (tree_key_t to_be_erased)

tree_key_t	bridge_edge_node (tree_key_t to_be_bridged)

int	external_branch_length ()

int	total_branch_length ()

int	ancestors_at_age (int age, tree_key_t subtree_root, vector< tree_key_t > &ancestors)

int	update_leaf_to_root (tree_key_t leaf)

void	update_tree ()

int	calc_weight_distribution (tree_key_t subtree_root)

void	SFS (gsl_histogram *sfs)

tree_key_t	get_MRCA ()

int	erase_child (map< tree_key_t, node_t >::iterator Pnode, tree_key_t to_be_erased)

int	delete_extra_children (tree_key_t subtree_root)

int	delete_one_child_nodes (tree_key_t subtree_root)

bool	check_node (tree_key_t node)

int	check_tree_integrity ()

void	clear_tree ()

string	print_newick ()

string	subtree_newick (tree_key_t root)

string	print_weight_distribution (tree_key_t node_key)

int	construct_subtree (vector< tree_key_t > subtree_leafs, rooted_tree &other)

Public Attributes
map< tree_key_t, edge_t >	edges

map< tree_key_t, node_t >	nodes

vector< tree_key_t >	leafs

tree_key_t	root

tree_key_t	MRCA

Constructor & Destructor Documentation

rooted_tree::rooted_tree ( )

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rooted_tree::~rooted_tree ( )

virtual

Member Function Documentation

void rooted_tree::add_generation	(	vector< node_t > &	new_generation,
		double	mean_fitness
	)

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int rooted_tree::add_terminal_node ( node_t & newNode )

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int rooted_tree::ancestors_at_age	(	int	age,
		tree_key_t	subtree_root,
		vector< tree_key_t > &	ancestors
	)

tree_key_t rooted_tree::bridge_edge_node ( tree_key_t to_be_bridged )

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int rooted_tree::calc_weight_distribution ( tree_key_t subtree_root )

bool rooted_tree::check_node ( tree_key_t node )

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int rooted_tree::check_tree_integrity ( )

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void rooted_tree::clear_tree ( )

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int rooted_tree::construct_subtree	(	vector< tree_key_t >	subtree_leafs,
		rooted_tree &	other
	)

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int rooted_tree::delete_extra_children ( tree_key_t subtree_root )

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int rooted_tree::delete_one_child_nodes ( tree_key_t subtree_root )

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int rooted_tree::erase_child	(	map< tree_key_t, node_t >::iterator	Pnode,
		tree_key_t	to_be_erased
	)

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tree_key_t rooted_tree::erase_edge_node ( tree_key_t to_be_erased )

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int rooted_tree::external_branch_length ( )

tree_key_t rooted_tree::get_MRCA ( )

inline

string rooted_tree::print_newick ( )

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string rooted_tree::print_weight_distribution ( tree_key_t node_key )

void rooted_tree::reset ( )

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void rooted_tree::SFS ( gsl_histogram * sfs )

string rooted_tree::subtree_newick ( tree_key_t root )

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int rooted_tree::total_branch_length ( )

int rooted_tree::update_leaf_to_root ( tree_key_t leaf )

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void rooted_tree::update_tree ( )

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Member Data Documentation

map< tree_key_t , edge_t > rooted_tree::edges

vector<tree_key_t> rooted_tree::leafs

tree_key_t rooted_tree::MRCA

map< tree_key_t , node_t > rooted_tree::nodes

tree_key_t rooted_tree::root

The documentation for this class was generated from the following files:

src/ffpopsim_highd.h
src/rootedTree.cpp

Public Member Functions

Public Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation