multi_locus_genealogy Class Reference

#include <ffpopsim_highd.h>

Public Member Functions
	multi_locus_genealogy ()
	Default constructor. More...
virtual	~multi_locus_genealogy ()
	Default destructor. More...
void	track_locus (int new_locus)
	Start tracking a new locus. More...
void	reset ()
void	reset_but_loci ()
void	add_generation (double baseline)
	Add a new generation to all trees. More...
int	extend_storage (int n)
	: allocates memory for a sufficient number of slots in the genealogy More...

Public Attributes
vector< int >	loci
vector< rooted_tree >	trees
vector< vector< node_t > >	newGenerations

Constructor & Destructor Documentation

multi_locus_genealogy::multi_locus_genealogy

(

)

Default constructor.

multi_locus_genealogy::~multi_locus_genealogy ( )

virtual

Default destructor.

Member Function Documentation

void multi_locus_genealogy::add_generation

(

double

baseline

)

Add a new generation to all trees.

Parameters

baseline

the new generation to be added

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int multi_locus_genealogy::extend_storage

(

int

n

)

: allocates memory for a sufficient number of slots in the genealogy

: the total number of slots required (should be population.size() in most cases)

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void multi_locus_genealogy::reset ( )

inline

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void multi_locus_genealogy::reset_but_loci ( )

inline

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void multi_locus_genealogy::track_locus

(

int

new_locus

)

Start tracking a new locus.

Parameters

new_locus

locus to be tracked

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Member Data Documentation

vector<int> multi_locus_genealogy::loci

vector< vector < node_t > > multi_locus_genealogy::newGenerations

vector<rooted_tree> multi_locus_genealogy::trees

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The documentation for this class was generated from the following files:

• src/ffpopsim_highd.h
• src/multiLocusGenealogy.cpp