.. _hivpopulation: .. currentmodule:: FFPopSim hivpopulation Class Reference ============================= .. autoclass:: hivpopulation :members: .. automethod:: hivpopulation.__init__(N=0, rng_seed=0, mutation_rate=3e-5, coinfection_rate=1e-2, crossover_rate=1e-3) .. automethod:: hivpopulation.__str__ .. automethod:: hivpopulation.__repr__ .. autoattribute:: hivpopulation.treatment .. automethod:: hivpopulation.write_genotypes(filename, sample_size, gt_label='', start=0, length=0) .. automethod:: hivpopulation.write_genotypes_compressed .. automethod:: hivpopulation.read_replication_coefficients(filename) .. automethod:: hivpopulation.read_resistance_coefficients(filename) .. automethod:: hivpopulation.set_trait_landscape .. automethod:: hivpopulation.set_replication_landscape .. automethod:: hivpopulation.set_resistance_landscape .. automethod:: hivpopulation.get_replication_additive .. automethod:: hivpopulation.get_resistance_additive .. automethod:: hivpopulation.set_replication_additive .. automethod:: hivpopulation.set_resistance_additive