The functionality of FFPopSim is described in detail in the following sections.
Simulations in FFPopSim are centered around population classes. These methods of these classes are divided in categories and described at the following pages:
FFPopSim can genealogies at individual loci within haploid_highd, using multi_locus_genealogy. Internally, this class itself contains instances of rooted_tree.
The documentation for the genealogy tracking capability is divided in two parts:
The classes used in FFPopSim are listed in the following pages for reference purposes:
In addition, the following helper functions are defined: